Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_09ANN0885186.471United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0886164.72United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0888197.243United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0889212.838United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0890180.042United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN0891184.389United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0892175.32United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0893194.001United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0894205.076United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0895187.984United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0896172.094United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0897172.675United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0898175.909United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0899182.141United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN0900184.295United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN0901170.279United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN0902188.448United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN0903163.566United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN0904165.112United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN0905183.294United StatesArizona35.19566-114.06666
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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