Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN0864210.54United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN0865211.187United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN0866197.397United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN0867209.431United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN0868194.456United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN0869197.242United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN0871192.067United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0872180.45United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0873209.007United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0874190.364United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0875185.84United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0876188.433United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0877189.747United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0878186.633United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0879197.025United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN0880192.988United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN0881173.212United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0882171.87United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0883166.905United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN0884190.562United StatesCalifornia37.43321-118.40646
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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