Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN0843169.706United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0844165.486United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0845182.559United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0846181.638United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0847183.98United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0848166.762United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0849178.372United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0850177.463United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN0851166.108United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0852176.913United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0853156.559United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0854174.262United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0855150.94United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0856176.293United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0857171.488United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0858160.326United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0859174.844United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN0860166.913United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN0862174.314United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN0863168.148United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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