Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN0822182.366United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0823177.688United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0824179.49United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0825171.117United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0826180.869United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0827163.303United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0828179.686United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0829149.304United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN0830173.52United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN0831201.1United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0832203.555United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0833195.098United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0835198.6United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0836191.539United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0837206.008United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0838218.653United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0839190.411United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN0840178.116United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN0841174.961United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN0842181.969United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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