Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_50ANN1297185.284United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN1298162.633United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN1299171.139United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN1300160.157United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN1301165.112United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1302162.248United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1303166.245United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1304166.576United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1305153.769United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1306156.658United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1307158.516United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1308117.467United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1309172.268United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_51ANN1310157.285United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN1311166.894United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN1312173.562United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN1313186.393United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN1314174.466United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN1315152.531United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN1316161.15United StatesTexas31.13312-104.02012
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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