Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_46ANN1254172.25United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN1255177.196United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN1256176.157United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN1257169.463United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN1258175.875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN1259176.173United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN1260180.952United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_47ANN1261202.286United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1262187.289United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1263168.002United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1264175.951United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1265177.171United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1266183.075United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1267169.771United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1268159.769United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1269171.352United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN1270178.117United StatesArizona32.73158-111.53769
Helianthus annuusANN_48ANN1271128.09United StatesArizona31.5081-111.01274
Helianthus annuusANN_48ANN1272137.844United StatesArizona31.5081-111.01274
Helianthus annuusANN_48ANN1273158.232United StatesArizona31.5081-111.01274
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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