Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN0989170.196United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN0990167.077United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN0991178.157United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0992199.808United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0993166.973United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0994163.235United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0995176.57United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0996155.594United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0997169.787United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0998172.8United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN0999151.523United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN1000166.605United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN1001175.334United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1002166.837United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1003205.614United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1004193.92United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1005191.384United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1006188.492United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1007189.05United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN1008170.844United StatesColorado38.91004-108.3738
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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