Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13850.4281125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13860.4008875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13870.4293375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13880.4116375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13890.422875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13900.4081United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13910.4054United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13920.444925United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13930.4360125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13940.39965United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13950.4047125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13960.3967United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13970.405425United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13980.397375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13990.401United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14000.440175United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14010.3953United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14020.400625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14030.418775United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14040.399775United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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