Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13650.424675United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13660.406575United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13670.401025United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13680.41785United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13690.4221125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13700.417275United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13710.412175United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13720.420175United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13730.3968625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13740.4073625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13750.3817United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13760.422675United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13770.3901United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13780.4191375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13790.43035United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13800.4139875United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13810.4078625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13820.3918875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13830.4208375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13840.4140375United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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