Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13410.418United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13420.4068625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13430.4026875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13440.39075United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13450.4057United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13460.4269875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13470.3962United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13480.412075United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13500.4084875United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13510.4036375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13520.4061375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13530.4015125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13540.4105125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13550.401925United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13560.418525United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13590.4034375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13600.4028625United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13610.42United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13630.411225United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13640.4575375United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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