Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13200.395125United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13210.389United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13220.4002875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13230.41835United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13240.3847875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13250.409875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13260.416United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13270.3942625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13280.4256625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13290.4058625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13300.421675United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13310.4305125United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13320.3823625United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13330.4011875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13340.3838375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13350.4095875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13360.3948125United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13380.4060375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13390.40095United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13400.3978875United StatesTexas29.11355-97.39837
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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