Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12630.43245United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12640.3965375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12650.3817375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12660.3761United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12670.3982375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12680.3956375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12690.3985875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12700.4102125United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12910.4012United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12920.4053375United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12940.39765United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13000.3885125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13020.4693375United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13110.3834United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13140.4034625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13150.409025United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13160.4242625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13170.3893125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13180.3718125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13190.3917625United StatesTexas31.13312-104.02012
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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