Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12390.4274United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12400.4295625United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12410.4059375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12420.4313375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12430.411775United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12440.404425United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12470.412675United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12480.4150375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12490.459875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12500.4492125United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12510.411716667United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12520.39275United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12530.39205United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12540.39455United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12550.3962375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12560.3961United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12570.4067United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12580.3793375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12590.3939875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12600.4001United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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