Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12150.4002United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12170.396525United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12180.42185United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12190.3893125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12200.400057143United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12210.374875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12220.3726125United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12230.3794375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12240.4118375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12260.396175United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12270.3878625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12280.388525United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12290.4322625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12300.372675United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12320.397375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12330.396825United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12350.4018625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12360.42075United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12370.390175United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12380.4148625United StatesTexas29.05186-99.01808
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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