Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11090.3805625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11100.4045United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11150.3990875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11160.4468875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11170.4052625United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11180.3913375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11190.3902375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11200.4140375United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11230.3935875United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11240.4104125United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11290.411575United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11300.381825United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11330.391225United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11350.379275United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11360.4045125United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11370.38855United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11380.399725United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11430.38925United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11440.39285United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11450.373525United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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