Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11460.409575United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11470.390375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11480.464825United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11490.4046United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11500.402925United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11510.40155United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11520.387525United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11530.425675United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11540.419025United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11550.3966875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11560.3902625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11570.4054375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11580.435625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11590.4285375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11600.4131625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11630.43175United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11640.4261125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11650.3857125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11660.408025United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11670.414875United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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