Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10800.3972375United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10840.381425United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10850.4064625United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10860.3803375United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10890.4427875United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10900.4069875United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10910.4066375United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10920.381475United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10930.411375United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10940.41555United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10950.3889375United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10960.4444625United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10970.4186125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10980.389875United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11010.4271United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11030.3971125United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11040.3924625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11050.39825United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11060.3721625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11070.394525United StatesUtah40.1781-111.65071
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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