Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10370.4138375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10380.3999375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10390.368725United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10400.3936625United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10450.43235United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10460.3965625United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10510.414775United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10610.3949125United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10620.416375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10680.4017375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10690.4040375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10700.401325United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10710.4099125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10720.417975United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10730.394825United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10750.409825United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10760.3985875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10770.3885875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10780.4004United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10790.414575United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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