Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10152.059475United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10162.0077375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10171.65578United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10181.591475United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10191.9934625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10201.776925United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10211.9132United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10221.7331375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10231.7United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10241.8430125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10251.8466125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10261.9164125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10291.731United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10301.9633United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10312.2657875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10322.1621125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10331.8486625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10341.810825United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10351.6668375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10362.1505125United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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