Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09862.0426625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09871.7272United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09881.7466875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09911.580833333United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09922.007325United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09961.8465625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09971.8006125United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09981.954875United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09991.6981625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10001.9104875United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10011.6938625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10021.84795United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10031.6512375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10071.638475United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10081.922275United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10092.0766United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10111.9292625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10121.9479625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10131.8241875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10141.8974125United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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