Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10371.7309United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10381.9109875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10392.0078125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10401.9879United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10451.748United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10461.8169375United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10511.6895375United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10611.7122375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10621.908575United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10681.5873875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10691.8026125United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10701.6054125United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10711.5773125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10721.6321625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10731.797175United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10751.7537United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10761.9540375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10771.8061375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10781.81915United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10791.6389875United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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