Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09582.7157625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09592.1494375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09602.3245625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09611.7379375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09621.5624625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09671.9744625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09681.7097United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09691.7478375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09701.5857375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09721.9996125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09751.8057125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09761.8477United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09771.82565United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09781.76455United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09801.872925United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09811.713425United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09822.0168125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09831.9173625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09841.927375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09852.0648375United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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