Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09292.077375United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09311.7744375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09321.5651875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09331.75185United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09341.74555United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09391.606525United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09401.815525United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09432.0883125United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09441.68785United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09471.59865United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09481.855625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09491.6929375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09501.5488125United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09511.514825United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09521.8042125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09531.76165United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09541.82585United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09552.1707125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09562.1721United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09571.819875United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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