Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08931.7363875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08941.4364United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08971.7762875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08981.78905United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09011.5055625United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09022.2872625United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09031.713583333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09071.69285United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09081.8569United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09111.8812875United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09121.7313375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09131.8429125United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09141.786125United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09191.862775United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09202.096125United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09211.7707United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09221.5542125United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09231.7948125United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09241.85094United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09271.8355875United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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