Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08701.9716375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08711.8084United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08731.6182375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08741.807825United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08761.92225United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08771.633United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08781.8827125United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08792.2323375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08801.7230625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08811.7165United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08821.9936375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08831.9194United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08841.747825United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08851.931United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08861.6302United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08871.8088United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08881.7865625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08892.00655United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08911.763475United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08922.0410625United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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