Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13851.7162625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13861.617325United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13871.760725United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13881.76445United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13891.7186United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13901.7714625United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13911.60145United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13921.5707625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13931.634225United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13941.697375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13951.889United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13961.83United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13971.744375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13981.4835125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13991.6269875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14001.6398375United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14011.5368625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14021.6461125United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14031.7619United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14041.5663625United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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