Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13652.0114125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13661.81915United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13671.8404United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13681.8845375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13692.02805United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13701.7561625United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13711.5075United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13721.5626375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13731.8732125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13741.8188125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13752.203775United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13761.85895United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13771.9112125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13781.4962375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13791.4373125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13801.7148125United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13811.878825United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13821.833United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13831.892875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13841.6334625United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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