Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13411.8006375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13421.57455United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13431.378525United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13441.52685United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13451.45405United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13461.71165United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13471.69725United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13481.7846United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13501.74695United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13511.62465United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13521.534525United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13531.7277125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13541.6900625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13551.8430875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13561.7948United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13592.08915United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13601.7060375United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13611.5577625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13631.9889375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13641.9289625United StatesTexas27.63854-97.24526
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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