Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13201.8119875United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13212.0749United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13222.018575United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13231.8193United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13242.153975United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13251.8095United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13261.983925United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13271.8961United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13281.6719625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13291.9622375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13301.7574125United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13311.6663875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13321.8225375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13331.60165United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13341.6194United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13351.7547United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13361.5103125United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13381.528175United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13391.86795United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13401.6489625United StatesTexas29.11355-97.39837
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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