Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11091.927475United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11102.0272125United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11151.844175United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11161.77445United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11171.59335United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11181.845525United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11191.7455United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11201.6609375United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11231.570925United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11241.6371875United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11291.6115375United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11301.6545625United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11331.775875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11351.7516125United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11361.6316875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11371.66615United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11381.64325United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11431.6896375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11441.7881875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11451.6386125United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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