Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09860.8796125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09870.822675United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09880.874225United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09910.864283333United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09920.81735United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09960.884175United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09970.8719375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09980.8419United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09990.8716375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10000.80995United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10010.87705United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10020.8541125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10030.837075United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10070.8529United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10080.8792375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10090.8587875United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10110.8799125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10120.845175United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10130.750175United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10140.8628125United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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