Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09580.8720125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09590.8694United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09600.871475United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09610.8598875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09620.8752United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09670.877975United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09680.8765875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09690.8326United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09700.8419United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09720.8648125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09750.8754625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09760.866125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09770.848525United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09780.8272625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09800.8787125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09810.873075United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09820.8709875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09830.86635United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09840.8639375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09850.8658375United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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