Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09290.831725United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09310.8384375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09320.8236United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09330.8593375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09340.8218United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09390.780875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09400.8426375United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09430.8368875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09440.833125United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09470.8734125United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09480.8528125United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09490.860325United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09500.8737875United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09510.8156375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09520.8416125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09530.8124United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09540.8451United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09550.836825United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09560.857775United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09570.865975United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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