Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08930.8104125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08940.8549125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08970.83805United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08980.7980375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09010.8592875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09020.857875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09030.868566667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09070.833566667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09080.8795United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09110.85875United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09120.851775United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09130.8384125United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09140.861375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09190.8571875United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09200.855625United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09210.8508375United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09220.7936875United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09230.8750125United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09240.8836United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09270.8562United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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