Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08700.8688375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08710.872175United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08730.82775United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08740.8773625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08760.8413375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08770.8578United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08780.7858625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08790.865075United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08800.8651United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08810.8635United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08820.8250125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08830.8626625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08840.8328United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08850.8744United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08860.8595375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08870.873525United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08880.8396125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08890.84855United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08910.8532United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08920.8384625United StatesCalifornia37.17346-118.27904
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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