Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13200.83475United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13210.8855United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13220.863225United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13230.8471625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13240.877525United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13250.832425United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13260.8559375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13270.8464125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13280.8129375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13290.850825United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13300.8493875United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13310.821725United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13320.8754625United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13330.8503375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13340.8640875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13350.8413625United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13360.849125United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13380.833425United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13390.8631United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13400.8581375United StatesTexas29.11355-97.39837
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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dominik.grimm [at] hswt.de

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