Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12630.815475United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12640.8607United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12650.876775United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12660.872775United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12670.8632United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12680.8595125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12690.863175United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12700.867525United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12910.8475125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12920.8599625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12940.8594125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13000.880825United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13020.755575United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13110.8843United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13140.8434625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13150.832725United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13160.8268125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13170.86925United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13180.8443625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13190.874575United StatesTexas31.13312-104.02012
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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