Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12390.831714286United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12400.837United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12410.8744875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12420.8467125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12430.8653375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12440.861175United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12470.8533United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12480.840975United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12490.7865United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12500.8511875United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12510.8311United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12520.8631United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12530.8701125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12540.84935United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12550.8763625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12560.88175United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12570.84255United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12580.874United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12590.868025United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12600.87025United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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