Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10150.88465United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10160.8880625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10170.88156United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10180.8819125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10190.889175United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10200.886375United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10210.8903375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10220.8876125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10230.861966667United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10240.870425United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10250.872375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10260.8719875United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10290.872075United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10300.877475United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10310.88855United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10320.8889United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10330.88815United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10340.8796United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10350.8829875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10360.8745875United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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