Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10370.838United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10380.8850875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10390.8802125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10400.882675United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10450.8746375United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10460.8828United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10510.8874United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10610.8804875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10620.8700625United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10680.8837875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10690.886975United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10700.871475United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10710.8906United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10720.8733875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10730.87715United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10750.883425United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10760.88055United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10770.882575United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10780.8892United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10790.887175United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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