Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09860.87385United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09870.879525United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09880.872775United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09910.88455United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09920.886325United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09960.8885625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09970.8937625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09980.88325United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09990.889125United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10000.877United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10010.8835United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10020.8816875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10030.8572125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10070.8357125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10080.876975United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10090.86185United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10110.879975United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10120.8834875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10130.869425United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10140.8605125United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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