Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09580.8873625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09590.8887375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09600.889525United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09610.8821United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09620.868775United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09670.8897375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09680.870525United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09690.884United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09700.851425United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09720.873275United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09750.887025United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09760.889325United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09770.878675United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09780.8612875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09800.8703United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09810.8825United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09820.8776125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09830.8817875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09840.8848625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09850.888975United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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