Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09290.8629125United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09310.8814United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09320.875325United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09330.8692875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09340.8764375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09390.8472375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09400.8703625United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09430.868075United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09440.8858875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09470.88965United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09480.8846375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09490.888725United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09500.8854875United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09510.843875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09520.8796United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09530.862175United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09540.80895United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09550.872375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09560.8869375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09570.8866625United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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