Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08930.8586875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08940.8578625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08970.8831875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08980.874425United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09010.8854375United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09020.8768125United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09030.834416667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09070.88025United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09080.84238United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09110.881625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09120.8593United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09130.8773375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09140.8852United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09190.8831125United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09200.879725United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09210.88225United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09220.8772875United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09230.89045United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09240.89054United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09270.868025United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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