Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13850.87425United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13860.87205United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13870.83505United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13880.8898125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13890.87495United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13900.88285United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13910.8735625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13920.872825United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13930.8814625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13940.8825United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13950.88375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13960.8832125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13970.879125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13980.8798United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13990.8799375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14000.8686875United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14010.86445United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14020.8778625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14030.8884375United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14040.8863125United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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