Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13650.8907125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13660.886425United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13670.87185United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13680.88425United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13690.860075United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13700.882475United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13710.8851625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13720.887475United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13730.8796375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13740.875575United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13750.890375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13760.8885375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13770.8689125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13780.8786United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13790.8684375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13800.8765125United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13810.887325United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13820.8926875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13830.88745United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13840.8823United StatesTexas26.50251-97.77181
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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