Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13410.87565United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13420.8798625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13430.8709125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13440.88035United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13450.869825United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13460.8727125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13470.8757125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13480.882975United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13500.883525United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13510.88025United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13520.8862625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13530.884United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13540.8855625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13550.8827375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13560.876125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13590.8811625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13600.8825625United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13610.8749625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13630.8822625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13640.8794625United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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93415 Straubing
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dominik.grimm [at] hswt.de

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