Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13200.8849875United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13210.89168United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13220.889425United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13230.874275United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13240.8663United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13250.8833United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13260.885425United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13270.882625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13280.8843United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13290.8504125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13300.8768United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13310.8662United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13320.8683625United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13330.873975United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13340.8601875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13350.88685United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13360.88705United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13380.8813United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13390.871925United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13400.864575United StatesTexas29.11355-97.39837
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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