Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12630.8853875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12640.8854875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12650.883475United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12660.867475United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12670.8829875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12680.885725United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12690.8837United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12700.864675United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12910.8664United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12920.8695125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12940.8658875United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13000.886475United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13020.871725United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13110.8741United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13140.8665United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13150.8821625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13160.8811875United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13170.887United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13180.8881375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13190.87775United StatesTexas31.13312-104.02012
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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