Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12390.887571429United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12400.8859United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12410.8888625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12420.857375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12430.8794125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12440.8834875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12470.87095United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12480.8756125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12490.877725United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12500.812575United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12510.87875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12520.889United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12530.8808375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12540.8858United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12550.8854United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12560.8898125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12570.886675United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12580.887375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12590.8811875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12600.8829375United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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